PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G144900.2
Common NamePHAVU_005G144900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 719aa    MW: 79646.8 Da    PI: 8.8331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G144900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07619668147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Phvul.005G144900.2 619 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 668
                         6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.73E-7420510IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.565614673IPR017930Myb domain
SMARTSM007172.0E-7618671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10619669IPR009057Homeodomain-like
CDDcd116604.77E-17620670No hitNo description
SuperFamilySSF466891.35E-15620701IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MVLQKRLYYS FNGYQVPTKR RATRSARRNA TFQRRLEDNQ MCAFDLLATV ADNLLQEKQN  60
PTTYSDRSLG KDREGFVKEE CQNANKPLKT ELSDEASCDR RCQHEFVKEE CTDANKPLKP  120
ELSDEGSSDR KGFSNISSQV YNQNCCLKEF PIHEIEGHSC IASIVTSSSC SEKFVAEKLV  180
DGKGQNGTEN LASKVELGSS GSPESIGCKL DGDDESKVKD VKFGKVPMDT GTGLCCSEDP  240
LDEKPPALVS SCGNAKLSGY DDSMPHSSLS KGCDNVLVDS RDDDENFSGC AHPSNKIKST  300
RPITCIDDRK IKKRLASKYH KAAQESKPDK LSNSVLDGNL KPVYSSRKNY YKSQRSQMNI  360
PFKKRKLFKC DSDTNSNGYI RSGDTYFSLK NETNQSVSYS SSGMSKDHGT SSLGHSALRS  420
RDSHVKLRIK SFRVPELLIE IPETATIGSL KRTVMEAVTA VLGGGLRVGV ILHGKKVRDD  480
NKTLLQTGIS HDNHLDALGF ALEPNFSQNL PPACATSSLR IPSADMPQPF IGYPSSPAVI  540
HQRIQGFSNT LAEHQATGLG NLVESDHDSA PSPINTSGEK KLSDSKELIT VPEMGMEALA  600
VLPGHQKSKR TEIAQRRIRR PFSVAEVEAL VQAVEKLGTG RWRDVKLRAF DNAKHRTYVD  660
LKDKWKTLVH TARITPQQRR GEPVPQELLD RVLTAHAYWS QQQTKQQLKH HSKPCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-586037181112Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150334.10.0hypothetical protein PHAVU_005G144900g
RefseqXP_007150335.10.0hypothetical protein PHAVU_005G144900g
RefseqXP_007150336.10.0hypothetical protein PHAVU_005G144900g
TrEMBLV7BWL20.0V7BWL2_PHAVU; Uncharacterized protein
STRINGGLYMA15G04200.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-109TRF-like 2