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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G144900.2 | ||||||||
Common Name | PHAVU_005G144900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB_related | ||||||||
Protein Properties | Length: 719aa MW: 79646.8 Da PI: 8.8331 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.7e-07 | 619 | 668 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Phvul.005G144900.2 619 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 668 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 2.73E-7 | 420 | 510 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 15.565 | 614 | 673 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 618 | 671 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-10 | 619 | 669 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.77E-17 | 620 | 670 | No hit | No description |
SuperFamily | SSF46689 | 1.35E-15 | 620 | 701 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MVLQKRLYYS FNGYQVPTKR RATRSARRNA TFQRRLEDNQ MCAFDLLATV ADNLLQEKQN 60 PTTYSDRSLG KDREGFVKEE CQNANKPLKT ELSDEASCDR RCQHEFVKEE CTDANKPLKP 120 ELSDEGSSDR KGFSNISSQV YNQNCCLKEF PIHEIEGHSC IASIVTSSSC SEKFVAEKLV 180 DGKGQNGTEN LASKVELGSS GSPESIGCKL DGDDESKVKD VKFGKVPMDT GTGLCCSEDP 240 LDEKPPALVS SCGNAKLSGY DDSMPHSSLS KGCDNVLVDS RDDDENFSGC AHPSNKIKST 300 RPITCIDDRK IKKRLASKYH KAAQESKPDK LSNSVLDGNL KPVYSSRKNY YKSQRSQMNI 360 PFKKRKLFKC DSDTNSNGYI RSGDTYFSLK NETNQSVSYS SSGMSKDHGT SSLGHSALRS 420 RDSHVKLRIK SFRVPELLIE IPETATIGSL KRTVMEAVTA VLGGGLRVGV ILHGKKVRDD 480 NKTLLQTGIS HDNHLDALGF ALEPNFSQNL PPACATSSLR IPSADMPQPF IGYPSSPAVI 540 HQRIQGFSNT LAEHQATGLG NLVESDHDSA PSPINTSGEK KLSDSKELIT VPEMGMEALA 600 VLPGHQKSKR TEIAQRRIRR PFSVAEVEAL VQAVEKLGTG RWRDVKLRAF DNAKHRTYVD 660 LKDKWKTLVH TARITPQQRR GEPVPQELLD RVLTAHAYWS QQQTKQQLKH HSKPCLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-58 | 603 | 718 | 1 | 112 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150334.1 | 0.0 | hypothetical protein PHAVU_005G144900g | ||||
Refseq | XP_007150335.1 | 0.0 | hypothetical protein PHAVU_005G144900g | ||||
Refseq | XP_007150336.1 | 0.0 | hypothetical protein PHAVU_005G144900g | ||||
TrEMBL | V7BWL2 | 0.0 | V7BWL2_PHAVU; Uncharacterized protein | ||||
STRING | GLYMA15G04200.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-109 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G144900.2 |
Entrez Gene | 18631092 |